{
  "_id": "6abe1baa99f7aa8c6aa5222a",
  "Package": "drcSeedGerm",
  "Date": "2023-04-20",
  "Type": "Package",
  "Title": "Utilities for Data Analyses in Seed Germination/Emergence Assays",
  "Version": "1.1.1",
  "Author": "Andrea Onofri <andrea.onofri@unipg.it>",
  "Maintainer": "Andrea Onofri <andrea.onofri@unipg.it>",
  "Description": "Utility functions to be used to analyse datasets obtained\nfrom seed germination/emergence assays. Fits several types of\nseed germination/emergence models, including those reported in\nOnofri et al. (2018) \"Hydrothermal-time-to-event models for\nseed germination\", European Journal of Agronomy, 101, 129-139\n<doi:10.1016/j.eja.2018.08.011>. Contains several datasets for\npracticing.",
  "URL": "https://www.statforbiology.com",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.0",
  "Config/pak/sysreqs": "cmake make libicu-dev",
  "Repository": "https://onofriandreapg.r-universe.dev",
  "Date/Publication": "2025-01-10 14:09:30 UTC",
  "RemoteUrl": "https://github.com/onofriandreapg/drcseedgerm",
  "RemoteRef": "HEAD",
  "RemoteSha": "d68b6e2e8b3b6ed20597f1d86d08c703db54630d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-01 08:24:15 UTC",
    "User": "root"
  },
  "_user": "onofriandreapg",
  "_type": "src",
  "_file": "drcSeedGerm_1.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/14e568a8700fbf36584f6d46b3134fa7ebe9002f38c9f205c73fd96eb0092f03",
  "_filesize": 381599,
  "_sha256": "14e568a8700fbf36584f6d46b3134fa7ebe9002f38c9f205c73fd96eb0092f03",
  "_expires": "2027-01-09T08:36:56.000Z",
  "_created": "2026-10-01T08:24:15.000Z",
  "_published": "2026-10-01T08:36:58.002Z",
  "_jobs": [
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      "time": 186,
      "config": "linux-devel-x86_64",
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  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/36835608120",
  "_status": "success",
  "_upstream": "https://github.com/onofriandreapg/drcseedgerm",
  "_commit": {
    "id": "d68b6e2e8b3b6ed20597f1d86d08c703db54630d",
    "author": "Andrea <onofriandreapg@gmail.com>",
    "committer": "Andrea <onofriandreapg@gmail.com>",
    "message": "Minor edits\n",
    "time": 1736518170
  },
  "_maintainer": {
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    "email": "andrea.onofri@unipg.it",
    "login": "onofriandreapg",
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    {
      "package": "drc",
      "role": "Depends"
    },
    {
      "package": "drcte",
      "role": "Depends"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    }
  ],
  "_owner": "onofriandreapg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "nonlinear-regression",
    "seed-germination-assays",
    "time-to-event"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "onofriandreapg",
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  "_userbio": {
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    "type": "user",
    "name": "Andrea Onofri",
    "followers": 43
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/drcSeedGerm"
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  "_devurl": "https://github.com/onofriandreapg/drcseedgerm",
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  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/drcSeedGerm.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
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  "_homeurl": "https://github.com/onofriandreapg/drcseedgerm",
  "_realowner": "onofriandreapg",
  "_cranurl": true,
  "_releases": [
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      "version": "1.0.1",
      "date": "2023-05-16"
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  ],
  "_exports": [
    "GRPsi.Lin",
    "GRPsi.Pol",
    "GRPsi.Pol2",
    "GRPsiLin",
    "GRPsiLin.fun",
    "GRPsiPol",
    "GRPsiPol.fun",
    "GRPsiPol2",
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    "GRT.BS",
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    "GRT.Ex",
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    "GRT.GH",
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    "GRT.GH2",
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    "GRT.M",
    "GRT.M.fun",
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    "GRT.Mb.fun",
    "GRT.RF",
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    "GRT.RFb",
    "GRT.RFb.fun",
    "GRT.YL",
    "GRT.YL.fun",
    "GRTPsi.BS",
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    "GRTPsi.M",
    "GRTPsi.M.fun",
    "HaloTL",
    "HaloTL.fun",
    "HaloTLL",
    "HaloTLL.fun",
    "HaloTnorm",
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    "HTE1",
    "HTE1.fun",
    "HTE2",
    "HTE2.fun",
    "HTE3",
    "HTE3.fun",
    "HTex",
    "HTex.fun",
    "HTG",
    "HTG.fun",
    "HTL",
    "HTL.fun",
    "HTLL",
    "HTLL.fun",
    "HTnorm",
    "HTnorm.fun",
    "HTTEM",
    "HTTEM.fun",
    "HTTLL.BS",
    "HTTLL.BS.fun",
    "HTTLL.M",
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    "HTTnorm.BS",
    "HTTnorm.BS.fun",
    "HTTnorm.M",
    "HTTnorm.M.fun",
    "HTW1",
    "HTW1.fun",
    "HTW2",
    "HTW2.fun",
    "jackGroupSE",
    "makeDrm",
    "makeDrm2",
    "PmaxPsi1",
    "PmaxPsi1.fun",
    "PmaxT1",
    "PmaxT1.fun",
    "TTEM",
    "TTEM.fun",
    "TTERF",
    "TTERF.fun",
    "TTERFc",
    "TTERFc.fun"
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  "_datasets": [
    {
      "name": "alfalfaSG",
      "title": "Field-book for a germination assay with alfalfa",
      "object": "alfalfaSG",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Dish",
        "Temp",
        "nViable",
        "1",
        "2",
        "3",
        "4",
        "5",
        "6",
        "7",
        "8",
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        "10",
        "11",
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        "27",
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        "29",
        "31",
        "34"
      ],
      "rows": 21,
      "table": true,
      "tojson": true
    },
    {
      "name": "barley",
      "title": "A series of germination assays with barley",
      "object": "barley",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Dish",
        "Temp",
        "timeBef",
        "timeAf",
        "nSeeds",
        "nCum",
        "propCum"
      ],
      "rows": 810,
      "table": true,
      "tojson": true
    },
    {
      "name": "excalibur",
      "title": "Relationship between germination rate and water potential in oilseed rape (var. Excalibur)",
      "object": "excalibur",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Perc",
        "Psi",
        "Tg",
        "SE",
        "GR"
      ],
      "rows": 27,
      "table": true,
      "tojson": true
    },
    {
      "name": "festuca",
      "title": "Relationship between germination rate and water potential in Festuca arundinacea L.",
      "object": "festuca",
      "class": [
        "data.frame"
      ],
      "fields": [
        "g",
        "Psi",
        "GR"
      ],
      "rows": 36,
      "table": true,
      "tojson": true
    },
    {
      "name": "hordeum",
      "title": "Germination of Hordeum spontaneum at different temperatures and water potentials",
      "object": "hordeum",
      "class": [
        "data.frame"
      ],
      "fields": [
        "temp",
        "water",
        "Dish",
        "timeBef",
        "timeAf",
        "nViable",
        "nSeeds",
        "nCum"
      ],
      "rows": 3024,
      "table": true,
      "tojson": true
    },
    {
      "name": "phalaris",
      "title": "A series of germination assays with Phalaris minor",
      "object": "phalaris",
      "class": [
        "data.frame"
      ],
      "fields": [
        "temp",
        "water",
        "Dish",
        "timeBef",
        "timeAf",
        "nViable",
        "nSeeds",
        "nCum",
        "propCum"
      ],
      "rows": 3024,
      "table": true,
      "tojson": true
    },
    {
      "name": "rape",
      "title": "Germination data from an assay of rapeseed at decreasing water potential levels",
      "object": "rape",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Psi",
        "Dish",
        "timeBef",
        "timeAf",
        "nSeeds",
        "nCum",
        "propCum"
      ],
      "rows": 294,
      "table": true,
      "tojson": true
    },
    {
      "name": "rape2G",
      "title": "Germination data from an assay of rapeseed at decreasing water potential levels",
      "object": "rape2G",
      "class": [
        "data.frame"
      ],
      "fields": [
        "CV",
        "Psi",
        "Dish",
        "timeBef",
        "timeAf",
        "nSeeds",
        "nCum",
        "Prop"
      ],
      "rows": 588,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "alfalfaSG",
      "title": "Field-book for a germination assay with alfalfa",
      "topics": [
        "alfalfaSG"
      ]
    },
    {
      "page": "barley",
      "title": "A series of germination assays with barley",
      "topics": [
        "barley"
      ]
    },
    {
      "page": "excalibur",
      "title": "Relationship between germination rate and water potential in oilseed rape (var. Excalibur)",
      "topics": [
        "excalibur"
      ]
    },
    {
      "page": "festuca",
      "title": "Relationship between germination rate and water potential in Festuca arundinacea L.",
      "topics": [
        "festuca"
      ]
    },
    {
      "page": "GRPsi_models",
      "title": "Hydro-time models based on the germination rate",
      "topics": [
        "GRPsi.Lin",
        "GRPsi.Pol",
        "GRPsi.Pol2",
        "GRPsiLin",
        "GRPsiLin.fun",
        "GRPsiPol",
        "GRPsiPol.fun",
        "GRPsiPol2",
        "GRPsiPol2.fun"
      ]
    },
    {
      "page": "GRT_models",
      "title": "Thermal-time models based on the germination rate",
      "topics": [
        "GRT.BS",
        "GRT.BS.fun",
        "GRT.BSb",
        "GRT.BSb.fun",
        "GRT.Ex",
        "GRT.Ex.fun",
        "GRT.Exb",
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        "GRT.GH",
        "GRT.GH.fun",
        "GRT.GH2",
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        "GRT.M.fun",
        "GRT.Mb",
        "GRT.Mb.fun",
        "GRT.RF",
        "GRT.RF.fun",
        "GRT.RFb",
        "GRT.RFb.fun",
        "GRT.YL",
        "GRT.YL.fun"
      ]
    },
    {
      "page": "GRTPsi_models",
      "title": "Hydro-Thermal-time models based on the germination rate",
      "topics": [
        "GRTPsi.BS",
        "GRTPsi.BS.fun",
        "GRTPsi.M",
        "GRTPsi.M.fun"
      ]
    },
    {
      "page": "HaloTL",
      "title": "Halotime model with logistic distribution of base salt concentration (derived from Bakhshandeh et al., 2020)",
      "topics": [
        "HaloTL",
        "HaloTL.fun"
      ]
    },
    {
      "page": "HaloTLL",
      "title": "Halotime model with log-logistic distribution of base salt concentration (derived from Bakhshandeh et al., 2020)",
      "topics": [
        "HaloTLL",
        "HaloTLL.fun"
      ]
    },
    {
      "page": "HaloTnorm",
      "title": "Halotime model with normal distribution of base salt concentration (derived from Bakhshandeh et al., 2020)",
      "topics": [
        "HaloTnorm",
        "HaloTnorm.fun"
      ]
    },
    {
      "page": "hordeum",
      "title": "Germination of Hordeum spontaneum at different temperatures and water potentials",
      "topics": [
        "hordeum"
      ]
    },
    {
      "page": "HTE1",
      "title": "Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)",
      "topics": [
        "HTE1",
        "HTE1.fun"
      ]
    },
    {
      "page": "HTE2",
      "title": "Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)",
      "topics": [
        "HTE2",
        "HTE2.fun"
      ]
    },
    {
      "page": "HTE3",
      "title": "Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)",
      "topics": [
        "HTE3",
        "HTE3.fun"
      ]
    },
    {
      "page": "HTEx",
      "title": "Hydrotime model with Type II Extreme Value distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTex",
        "HTex.fun"
      ]
    },
    {
      "page": "HTG",
      "title": "Hydrotime model with Gumbel distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTG",
        "HTG.fun"
      ]
    },
    {
      "page": "HTL",
      "title": "Hydrotime model with logistic distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTL",
        "HTL.fun"
      ]
    },
    {
      "page": "HTLL",
      "title": "Hydrotime model with log-logistic distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTLL",
        "HTLL.fun"
      ]
    },
    {
      "page": "HTnorm",
      "title": "Hydrotime model with normal distribution of base water potential (Bradford, 2002)",
      "topics": [
        "HTnorm",
        "HTnorm.fun"
      ]
    },
    {
      "page": "HTTEM",
      "title": "Hydro-thermal-time model with log-logistic distribution of germination time (Onofri et al., 2018)",
      "topics": [
        "HTTEM",
        "HTTEM.fun"
      ]
    },
    {
      "page": "HTTLL",
      "title": "Hydro-thermal-time model with log-logistic distribution of base water potential (Mesgaran et al., 2017)",
      "topics": [
        "HTTLL.BS",
        "HTTLL.BS.fun",
        "HTTLL.M",
        "HTTLL.M.fun"
      ]
    },
    {
      "page": "HTTnorm",
      "title": "Hydro-thermal-time model with normal distribution of base water potential (Bradford, 2002)",
      "topics": [
        "HTTnorm.BS",
        "HTTnorm.BS.fun",
        "HTTnorm.M",
        "HTTnorm.M.fun"
      ]
    },
    {
      "page": "HTW1",
      "title": "Hydrotime model with Weibull Type I distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTW1",
        "HTW1.fun"
      ]
    },
    {
      "page": "HTW2",
      "title": "Hydrotime model with Weibull Type II distribution of base water potential (Mesgaran et al., 2013)",
      "topics": [
        "HTW2",
        "HTW2.fun"
      ]
    },
    {
      "page": "jackGroup",
      "title": "Delete-a-Petri-dish jackknife",
      "topics": [
        "jackGroupSE"
      ]
    },
    {
      "page": "makeDrm",
      "title": "Reshape a seed germination datasets for time-to-event analyses (deprecated)",
      "topics": [
        "makeDrm"
      ]
    },
    {
      "page": "makeDrm2",
      "title": "Reshape a seed germination datasets for time-to-event model fitting.",
      "topics": [
        "makeDrm2"
      ]
    },
    {
      "page": "phalaris",
      "title": "A series of germination assays with Phalaris minor",
      "topics": [
        "phalaris"
      ]
    },
    {
      "page": "Pmax_models",
      "title": "Effect of environmental water potential or temperature on the germination capability of a seed lot",
      "topics": [
        "PmaxPsi1",
        "PmaxPsi1.fun",
        "PmaxT1",
        "PmaxT1.fun"
      ]
    },
    {
      "page": "rape",
      "title": "Germination data from an assay of rapeseed at decreasing water potential levels",
      "topics": [
        "rape"
      ]
    },
    {
      "page": "rape2G",
      "title": "Germination data from an assay of rapeseed at decreasing water potential levels",
      "topics": [
        "rape2G"
      ]
    },
    {
      "page": "TTE_models",
      "title": "Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)",
      "topics": [
        "TTEM",
        "TTEM.fun",
        "TTERF",
        "TTERF.fun",
        "TTERFc",
        "TTERFc.fun"
      ]
    }
  ],
  "_readme": "https://github.com/onofriandreapg/drcseedgerm/raw/HEAD/README.md",
  "_rundeps": [
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    "viridisLite",
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  "_score": 3.3979400086720375,
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  "_nocasepkg": "drcseedgerm",
  "_universes": [
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  "_binaries": [
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