{ "_id": "6a4796ce2f27a93436c0eeca", "Package": "drcte", "Date": "2025-12-05", "Type": "Package", "Title": "Statistical Approaches for Time-to-Event Data in Agriculture", "Version": "1.0.66", "Authors@R": "c(person(\"Andrea\" , \"Onofri\", role = c(\"aut\", \"cre\"), email=\"andrea.onofri@unipg.it\"))", "Maintainer": "Andrea Onofri ", "Description": "A specific and comprehensive framework for the analyses of\ntime-to-event data in agriculture. Fit non-parametric and\nparametric time-to-event models. Compare time-to-event curves\nfor different experimental groups. Plots and other displays. It\nis particularly tailored to the analyses of data from\ngermination and emergence assays. The methods are described in\nOnofri et al. (2022) \"A unified framework for the analysis of\ngermination, emergence, and other time-to-event data in weed\nscience\", Weed Science, 70, 259-271 .", "URL": "https://www.statforbiology.com", "BugReports": "https://github.com/OnofriAndreaPG/drcte/issues", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RoxygenNote": "6.1.1", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://onofriandreapg.r-universe.dev", "Date/Publication": "2025-12-05 09:05:47 UTC", "RemoteUrl": "https://github.com/onofriandreapg/drcte", "RemoteRef": "HEAD", "RemoteSha": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 06:58:56 UTC", "User": "root" }, "Author": "Andrea Onofri [aut, cre]", "_user": "onofriandreapg", "_type": "src", "_file": "drcte_1.0.66.tar.gz", "_fileid": "https://r2.ropensci.org/6c39933a6171c5954df24ee1e25f7fa7201d46b60ba63e0ee21021aca292b443", "_filesize": 339237, "_sha256": "6c39933a6171c5954df24ee1e25f7fa7201d46b60ba63e0ee21021aca292b443", "_expires": "2026-10-11T11:02:37.000Z", "_created": "2026-07-03T06:58:56.000Z", "_published": "2026-07-03T11:02:38.271Z", "_jobs": [ { "job": 84986192211, "time": 179, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8059913180" }, { "job": 84986192587, "time": 171, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8059910883" }, { "job": 84986193179, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8059901465" }, { "job": 84986192438, "time": 116, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8059906514" }, { "job": 84986191769, "time": 193, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8059860944" }, { "job": 84986192324, "time": 154, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8059905982" }, { "job": 84986192563, "time": 116, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8059894780" }, { "job": 84986192337, "time": 131, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8059899160" }, { "job": 84986192886, "time": 111, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8059893336" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395", "_status": "success", "_upstream": "https://github.com/onofriandreapg/drcte", "_commit": { "id": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "author": "Andrea ", "committer": "Andrea ", "message": "Updated to version 1.0.66\n\nMade corrections of several plotting buglets with NPMLE\n", "time": 1764925547 }, "_maintainer": { "name": "Andrea Onofri", "email": "andrea.onofri@unipg.it", "login": "onofriandreapg", "description": "", "uuid": 36607650 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "drc", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "nor1mix", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "mclust", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "sandwich", "role": "Imports" }, { "package": "lmtest", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "multcomp", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "car", "role": "Imports" } ], "_owner": "onofriandreapg", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-34", "n": 3 }, { "week": "2025-49", "n": 1 } ], "_tags": [], "_topics": [ "non-linear-regression", "seed-germination", "time-to-event" ], "_stars": 0, "_contributors": [ { "user": "onofriandreapg", "count": 39, "uuid": 36607650 }, { "user": "olivroy", "count": 1, "uuid": 52606734 } ], "_userbio": { "uuid": 36607650, "type": "user", "name": "Andrea Onofri", "followers": 43 }, "_downloads": { "count": 432, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/drcte" }, "_devurl": "https://github.com/onofriandreapg/drcte", "_searchresults": 43, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/drcte.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/onofriandreapg/drcte", "_realowner": "onofriandreapg", "_cranurl": true, "_releases": [ { "version": "1.0.30", "date": "2023-05-08" }, { "version": "1.0.65", "date": "2025-08-20" } ], "_exports": [ "compCDF", "compParmte", "decumulate_te", "drmte", "drmteControl", "exponential", "exponentialSurv", "group_te", "KDE", "KDE.fun", "loglogistic", "loglogisticSurv", "lognormal", "lognormalSurv", "melt_te", "NPMLE", "plot.drcte", "plotData", "ungroup_te" ], "_datasets": [ { "name": "lotus", "title": "Germination assay with Lotus ornithopodioides", "object": "lotus", "file": "lotus.rda", "class": [ "data.frame" ], "fields": [ "Stage", "Dish", "timeBef", "timeAf", "count", "nCum", "propCum" ], "rows": 192, "table": true, "tojson": true }, { "name": "lotusCum", "title": "Germination assay with Lotus ornithopodioides", "object": "lotusCum", "file": "lotusCum.rda", "class": [ "data.frame" ], "fields": [ "Stage", "Dish", "Time", "nSeeds", "nCum", "Prop" ], "rows": 180, "table": true, "tojson": true }, { "name": "lotusOr", "title": "Germination assay with Lotus ornithopodioides", "object": "lotusOr", "file": "lotusOr.rda", "class": [ "data.frame" ], "fields": [ "Stage", "Dish", "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15" ], "rows": 12, "table": true, "tojson": true }, { "name": "verbascum", "title": "Germination time-course for three species of the Verbascum genus", "object": "verbascum", "file": "verbascum.rda", "class": [ "data.frame" ], "fields": [ "Dish", "Species", "timeBef", "timeAf", "nSeeds", "nCum" ], "rows": 192, "table": true, "tojson": true } ], "_help": [ { "page": "compCDF", "title": "Compare time-to-event curves", "topics": [ "compCDF" ] }, { "page": "compParmte", "title": "Comparison of parameters for time-to-event models", "topics": [ "compParmte" ] }, { "page": "drmte", "title": "Fitting time-to-event models for seed science", "topics": [ "drmte" ] }, { "page": "drmteControl", "title": "Sets control arguments", "topics": [ "drmteControl" ] }, { "page": "ED.drcte", "title": "Estimating the quantiles for time-to-event models", "topics": [ "ED.drcte" ] }, { "page": "exponential", "title": "(Shifted) - Exponential distribution of germination times within a seed lot", "topics": [ "exponential", "exponentialSurv" ] }, { "page": "KDE", "title": "Kernel estimator for the cumulative distribution function", "topics": [ "KDE", "KDE.fun" ] }, { "page": "loglogistic", "title": "Log-logistic distribution of germination times within a seed lot", "topics": [ "loglogistic", "loglogisticSurv" ] }, { "page": "lognormal", "title": "Log-normal distribution of times to an event", "topics": [ "lognormal", "lognormalSurv" ] }, { "page": "Lotus", "title": "Germination assay with Lotus ornithopodioides", "topics": [ "lotus" ] }, { "page": "lotusCum", "title": "Germination assay with Lotus ornithopodioides", "topics": [ "lotusCum" ] }, { "page": "lotusOr", "title": "Germination assay with Lotus ornithopodioides", "topics": [ "lotusOr" ] }, { "page": "NPMLE", "title": "NPMLE for time-to-event data", "topics": [ "NPMLE", "NPMLE.fun" ] }, { "page": "plot.drcte", "title": "Plotting fitted time-to-event models", "topics": [ "plot.drcte" ] }, { "page": "plotData", "title": "Data for plotting fitted time-to-event models", "topics": [ "plotData" ] }, { "page": "predict.drcte", "title": "Prediction", "concept": [ "prediction" ], "topics": [ "predict.drcte", "predict.list" ] }, { "page": "quantile.drcte", "title": "Estimating quantiles for time-to-event models", "topics": [ "quantile.drcte" ] }, { "page": "reshape.drcte", "title": "Reshaping time-to-event datasets", "topics": [ "decumulate_te", "group_te", "melt_te", "ungroup_te" ] }, { "page": "internal-Functions", "title": "Service functions", "topics": [ "NLSLL.3" ] }, { "page": "summary.drcte", "title": "Summarising time-to-event fits", "topics": [ "summary.drcte" ] }, { "page": "verbascum", "title": "Germination time-course for three species of the Verbascum genus", "topics": [ "verbascum" ] } ], "_readme": "https://github.com/onofriandreapg/drcte/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "boot", "broom", "car", "carData", "cli", "codetools", "colorspace", "cowplot", "cpp11", "Deriv", "doBy", "dplyr", "drc", "farver", "forecast", "Formula", "fracdiff", "generics", "ggplot2", "glue", "gtable", "gtools", "isoband", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "mclust", "mgcv", "minqa", "modelr", "multcomp", "mvtnorm", "nlme", "nloptr", "nnet", "nor1mix", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "plotrix", "plyr", "purrr", "quantreg", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "S7", "sandwich", "scales", "SparseM", "stringi", "stringr", "survival", "TH.data", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "zoo" ], "_score": 4.41161970596323, "_indexed": true, "_nocasepkg": "drcte", "_universes": [ "onofriandreapg" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.66", "date": "2026-07-03T07:01:28.000Z", "distro": "resolute", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/d01aaded3c0e5bc905ed395a1d29cb2a6a4b81bb10aa2ed29bedbca0d3c0ed81", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.6.1", "os": "linux", "version": "1.0.66", "date": "2026-07-03T07:01:22.000Z", "distro": "resolute", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/f435887ccff9fdedddb120ca46edc90fddaf22c771eabdd7f7e113baa15058a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.5.3", "os": "mac", "version": "1.0.66", "date": "2026-07-03T07:01:10.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/6c7b0829b949bd0dae6b58aa216f85e0de1103067bf341006888d5402675cf78", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.6.1", "os": "mac", "version": "1.0.66", "date": "2026-07-03T07:01:18.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/ed9755869a48e6e158475fe6a5fbac878ca61ab4cac183df32462841a36e4d4a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.66", "date": "2026-07-03T07:01:54.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/e8283396653fb7fbe3b1200cdcbb4d2bdbe3f8ea47e3877dc0f25487a122b759", "status": "success", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.7.0", "os": "win", "version": "1.0.66", "date": "2026-07-03T07:00:16.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/15aac2f5fc6feddc6f3d425ee790ba4592b780921c2e1176d48d3a889f61137d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.5.3", "os": "win", "version": "1.0.66", "date": "2026-07-03T07:00:28.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/fdd5793f400e9f029cee6a9eaa529b20d41acf5c83d2dc0c6daf4c7594206a3f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" }, { "r": "4.6.1", "os": "win", "version": "1.0.66", "date": "2026-07-03T07:00:15.000Z", "commit": "a9b98be3e51cc4579be1f58e291d6db580238ebd", "fileid": "https://r2.ropensci.org/a59908e1d3431737f3503998c16bef293c3aedab4fa67fecbf605e3591054d59", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28643976395" } ] }