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  "Version": "1.0.2",
  "Date": "2025-11-25",
  "Title": "Linear Fixed/Mixed Effects Models for Diallel Crosses",
  "Authors@R": "c(person(\"Andrea\" , \"Onofri\", role = c(\"aut\", \"cre\"), email=\"andrea.onofri@unipg.it\"), \nperson(\"Niccolo\", \"Terzaroli\", email=\"n.terzaroli@gmail.com\", role = \"aut\"))",
  "Maintainer": "Andrea Onofri <andrea.onofri@unipg.it>",
  "Description": "Several service functions to be used to analyse datasets\nobtained from diallel experiments within the frame of linear\nmodels in R, as described in Onofri et al (2020)\n<DOI:10.1007/s00122-020-03716-8>.",
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  "License": "GPL (>= 2)",
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  "Repository": "https://onofriandreapg.r-universe.dev",
  "Date/Publication": "2025-11-25 15:47:15 UTC",
  "RemoteUrl": "https://github.com/onofriandreapg/lmdiallel",
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  "Author": "Andrea Onofri [aut, cre],\nNiccolo Terzaroli [aut]",
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    "blockMatrixDiagonal",
    "checkScheme",
    "DD",
    "diallel.eff",
    "emm.diallel",
    "expand.diallel",
    "G1.eff",
    "G2.eff",
    "G3.eff",
    "G4.eff",
    "GCA",
    "GCAC",
    "GCAmis",
    "GE2.eff",
    "GE2r.eff",
    "GE3.eff",
    "GE3r.eff",
    "glht.diallelMod",
    "H.BAR",
    "hayman1.eff",
    "hayman2.eff",
    "Hi",
    "int.matrix",
    "lm.diallel",
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    "MDD",
    "MET1.eff",
    "MET2.eff",
    "MET3.eff",
    "mmer.diallel",
    "model.matrix.diallel",
    "model.matrixDiallel",
    "model.matrixDiallel.MET",
    "predict.diallel",
    "REC",
    "REC.G3",
    "RGCA",
    "RSCA",
    "SCA",
    "SCA.G3",
    "SCA.GE",
    "SCAmis",
    "SP",
    "summary.diallel",
    "tSCA",
    "vcov.diallel",
    "VEi"
  ],
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      "name": "diallelMET",
      "title": "Factitious dataset for Diallel analysis",
      "object": "diallelMET",
      "file": "diallelMET.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Env",
        "Block",
        "Par1",
        "Par2",
        "Yield"
      ],
      "rows": 1050,
      "table": true,
      "tojson": true
    },
    {
      "name": "griffing56",
      "title": "Griffing's dataset for diallel analysis",
      "object": "griffing56",
      "file": "griffing56.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Par1",
        "Par2",
        "Yield",
        "Cob",
        "Shelled"
      ],
      "rows": 36,
      "table": true,
      "tojson": true
    },
    {
      "name": "hayman54",
      "title": "Hayman dataset for diallel analysis",
      "object": "hayman54",
      "file": "hayman54.rda",
      "class": [
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      ],
      "fields": [
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        "Par1",
        "Par2",
        "Ftime"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Half diallel of maize dataset",
      "object": "lonnquist61",
      "file": "lonnquist61.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Par1",
        "Par2",
        "Yield"
      ],
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      "table": true,
      "tojson": true
    },
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      "name": "zhang05",
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      "class": [
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        "Par2",
        "Block",
        "Combination",
        "Env",
        "Yield"
      ],
      "rows": 60,
      "table": true,
      "tojson": true
    }
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  "_help": [
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      "page": "blockMatrixDiagonal",
      "title": "Creates block diagonal matrix. It is used internally.",
      "topics": [
        "blockMatrixDiagonal"
      ]
    },
    {
      "page": "DD",
      "title": "Dominant Deviation effect",
      "topics": [
        "DD"
      ]
    },
    {
      "page": "diallelMET",
      "title": "Factitious dataset for Diallel analysis",
      "topics": [
        "diallelMET"
      ]
    },
    {
      "page": "methods.glht",
      "title": "Functions to retreive full list of genetical effects",
      "topics": [
        "diallel.eff",
        "G1.eff",
        "G2.eff",
        "G3.eff",
        "G4.eff",
        "GE2.eff",
        "GE2r.eff",
        "GE3.eff",
        "GE3r.eff",
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        "hayman1.eff",
        "hayman2.eff",
        "MET1.eff",
        "MET2.eff",
        "MET3.eff"
      ]
    },
    {
      "page": "expand.diallel",
      "title": "Create a Data Frame from All Combinations of Parentals",
      "topics": [
        "expand.diallel"
      ]
    },
    {
      "page": "GCA",
      "title": "General Combining Ability effect",
      "topics": [
        "GCA",
        "GCAmis"
      ]
    },
    {
      "page": "GCAC",
      "title": "General Combining Ability without considering the selfed parents",
      "topics": [
        "GCAC"
      ]
    },
    {
      "page": "griffing56",
      "title": "Griffing's dataset for diallel analysis",
      "topics": [
        "griffing56"
      ]
    },
    {
      "page": "H.BAR",
      "title": "Average heterosis effect",
      "topics": [
        "H.BAR"
      ]
    },
    {
      "page": "hayman54",
      "title": "Hayman dataset for diallel analysis",
      "topics": [
        "hayman54"
      ]
    },
    {
      "page": "Hi",
      "title": "Average heterosis effect",
      "topics": [
        "Hi"
      ]
    },
    {
      "page": "Utilities",
      "title": "Utilities for fitting diallel models.",
      "topics": [
        "checkScheme",
        "emm.diallel",
        "int.matrix"
      ]
    },
    {
      "page": "lm.diallel",
      "title": "Fitting diallel linear models",
      "topics": [
        "lm.diallel"
      ]
    },
    {
      "page": "methods",
      "title": "Methods for diallel model fitting",
      "topics": [
        "anova.diallel",
        "glht.diallel",
        "model.matrix.diallel",
        "predict.diallel",
        "summary.diallel",
        "vcov.diallel"
      ]
    },
    {
      "page": "lonnquist61",
      "title": "Half diallel of maize dataset",
      "topics": [
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      ]
    },
    {
      "page": "MatBlock",
      "title": "Design matrix for blocks",
      "topics": [
        "matBlock"
      ]
    },
    {
      "page": "MDD",
      "title": "Mean Dominance Deviation effect",
      "topics": [
        "MDD"
      ]
    },
    {
      "page": "mmer.diallel",
      "title": "Fitting random diallel linear models",
      "topics": [
        "mmer.diallel"
      ]
    },
    {
      "page": "model.matrixDiallel",
      "title": "Incidence matrices for Diallel model parametrisation",
      "topics": [
        "model.matrixDiallel",
        "model.matrixDiallel.MET"
      ]
    },
    {
      "page": "REC",
      "title": "Reciprocal Effect not parted into RGCA and RSCA",
      "topics": [
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        "REC.G3"
      ]
    },
    {
      "page": "RGCA",
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      "topics": [
        "RGCA"
      ]
    },
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      "page": "RSCA",
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      "topics": [
        "RSCA"
      ]
    },
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        "SCA.G3",
        "SCA.GE",
        "SCAmis"
      ]
    },
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      "page": "SP",
      "title": "Selfed Parents effect",
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      ]
    },
    {
      "page": "tSCA",
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        "tSCA"
      ]
    },
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      "title": "Variety Effect",
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      ]
    },
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      ]
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