{
  "_id": "6a3a49af6265ec60d620c9c1",
  "Package": "lmDiallel",
  "Version": "1.0.2",
  "Date": "2025-11-25",
  "Title": "Linear Fixed/Mixed Effects Models for Diallel Crosses",
  "Authors@R": "c(person(\"Andrea\" , \"Onofri\", role = c(\"aut\", \"cre\"), email=\"andrea.onofri@unipg.it\"), \nperson(\"Niccolo\", \"Terzaroli\", email=\"n.terzaroli@gmail.com\", role = \"aut\"))",
  "Maintainer": "Andrea Onofri <andrea.onofri@unipg.it>",
  "Description": "Several service functions to be used to analyse datasets\nobtained from diallel experiments within the frame of linear\nmodels in R, as described in Onofri et al (2020)\n<DOI:10.1007/s00122-020-03716-8>.",
  "URL": "https://www.statforbiology.com/lmDiallel/",
  "License": "GPL (>= 2)",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://onofriandreapg.r-universe.dev",
  "Date/Publication": "2025-11-25 15:47:15 UTC",
  "RemoteUrl": "https://github.com/onofriandreapg/lmdiallel",
  "RemoteRef": "HEAD",
  "RemoteSha": "f0d1272bea0878d3ebe604943dc71693e664d004",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-23 08:50:02 UTC",
    "User": "root"
  },
  "Author": "Andrea Onofri [aut, cre],\nNiccolo Terzaroli [aut]",
  "MD5sum": "1c5f378ed3e458e08beb6bded7a8ffca",
  "_user": "onofriandreapg",
  "_type": "src",
  "_file": "lmDiallel_1.0.2.tar.gz",
  "_fileid": "66be2b3268ddaa49914d6a5c59a5c0d63c095a024be5b6d228f42c6c87d3d4b1",
  "_filesize": 209722,
  "_sha256": "66be2b3268ddaa49914d6a5c59a5c0d63c095a024be5b6d228f42c6c87d3d4b1",
  "_created": "2026-06-23T08:50:02.000Z",
  "_published": "2026-06-23T08:54:07.209Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 82914335838,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7815978915"
    },
    {
      "job": 82914335769,
      "time": 163,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7815983827"
    },
    {
      "job": 82914335833,
      "time": 135,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7815968442"
    },
    {
      "job": 82914335771,
      "time": 208,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7815990098"
    },
    {
      "job": 82913780662,
      "time": 179,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7815923568"
    },
    {
      "job": 82914335786,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7815966498"
    },
    {
      "job": 82914335808,
      "time": 110,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7815965012"
    },
    {
      "job": 82914335831,
      "time": 131,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7815973195"
    },
    {
      "job": 82914335829,
      "time": 99,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7815961687"
    }
  ],
  "_buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/onofriandreapg/lmdiallel",
  "_commit": {
    "id": "f0d1272bea0878d3ebe604943dc71693e664d004",
    "author": "AndreaOnofri <andrea.onofri@unipg.it>",
    "committer": "AndreaOnofri <andrea.onofri@unipg.it>",
    "message": "minor updates\n",
    "time": 1764085635
  },
  "_maintainer": {
    "name": "Andrea Onofri",
    "email": "andrea.onofri@unipg.it",
    "login": "onofriandreapg",
    "description": "",
    "uuid": 36607650
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "multcomp",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "sommer",
      "role": "Imports"
    },
    {
      "package": "enhancer",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    }
  ],
  "_owner": "onofriandreapg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-48",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 5,
  "_contributors": [
    {
      "user": "onofriandreapg",
      "count": 48,
      "uuid": 36607650
    }
  ],
  "_userbio": {
    "uuid": 36607650,
    "type": "user",
    "name": "Andrea Onofri",
    "followers": 43
  },
  "_downloads": {
    "count": 272,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lmDiallel"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/onofriandreapg/lmdiallel",
  "_searchresults": 20,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/lmDiallel.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/onofriandreapg/lmdiallel",
  "_realowner": "onofriandreapg",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.9.4",
      "date": "2021-08-13"
    },
    {
      "version": "0.9.5",
      "date": "2022-05-04"
    },
    {
      "version": "1.0.1",
      "date": "2023-04-19"
    },
    {
      "version": "1.0.2",
      "date": "2025-11-25"
    }
  ],
  "_exports": [
    "anova.diallel",
    "blockMatrixDiagonal",
    "checkScheme",
    "DD",
    "diallel.eff",
    "emm.diallel",
    "expand.diallel",
    "G1.eff",
    "G2.eff",
    "G3.eff",
    "G4.eff",
    "GCA",
    "GCAC",
    "GCAmis",
    "GE2.eff",
    "GE2r.eff",
    "GE3.eff",
    "GE3r.eff",
    "glht.diallelMod",
    "H.BAR",
    "hayman1.eff",
    "hayman2.eff",
    "Hi",
    "int.matrix",
    "lm.diallel",
    "matBlock",
    "MDD",
    "MET1.eff",
    "MET2.eff",
    "MET3.eff",
    "mmer.diallel",
    "model.matrix.diallel",
    "model.matrixDiallel",
    "model.matrixDiallel.MET",
    "predict.diallel",
    "REC",
    "REC.G3",
    "RGCA",
    "RSCA",
    "SCA",
    "SCA.G3",
    "SCA.GE",
    "SCAmis",
    "SP",
    "summary.diallel",
    "tSCA",
    "vcov.diallel",
    "VEi"
  ],
  "_datasets": [
    {
      "name": "diallelMET",
      "title": "Factitious dataset for Diallel analysis",
      "object": "diallelMET",
      "file": "diallelMET.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Env",
        "Block",
        "Par1",
        "Par2",
        "Yield"
      ],
      "rows": 1050,
      "table": true,
      "tojson": true
    },
    {
      "name": "griffing56",
      "title": "Griffing's dataset for diallel analysis",
      "object": "griffing56",
      "file": "griffing56.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Par1",
        "Par2",
        "Yield",
        "Cob",
        "Shelled"
      ],
      "rows": 36,
      "table": true,
      "tojson": true
    },
    {
      "name": "hayman54",
      "title": "Hayman dataset for diallel analysis",
      "object": "hayman54",
      "file": "hayman54.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Block",
        "Par1",
        "Par2",
        "Ftime"
      ],
      "rows": 128,
      "table": true,
      "tojson": true
    },
    {
      "name": "lonnquist61",
      "title": "Half diallel of maize dataset",
      "object": "lonnquist61",
      "file": "lonnquist61.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Par1",
        "Par2",
        "Yield"
      ],
      "rows": 21,
      "table": true,
      "tojson": true
    },
    {
      "name": "zhang05",
      "title": "Data for diallel analysis from Zhang (2005)",
      "object": "zhang05",
      "file": "zhang05.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Par1",
        "Par2",
        "Block",
        "Combination",
        "Env",
        "Yield"
      ],
      "rows": 60,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "blockMatrixDiagonal",
      "title": "Creates block diagonal matrix. It is used internally.",
      "topics": [
        "blockMatrixDiagonal"
      ]
    },
    {
      "page": "DD",
      "title": "Dominant Deviation effect",
      "topics": [
        "DD"
      ]
    },
    {
      "page": "diallelMET",
      "title": "Factitious dataset for Diallel analysis",
      "topics": [
        "diallelMET"
      ]
    },
    {
      "page": "methods.glht",
      "title": "Functions to retreive full list of genetical effects",
      "topics": [
        "diallel.eff",
        "G1.eff",
        "G2.eff",
        "G3.eff",
        "G4.eff",
        "GE2.eff",
        "GE2r.eff",
        "GE3.eff",
        "GE3r.eff",
        "glht.diallelMod",
        "hayman1.eff",
        "hayman2.eff",
        "MET1.eff",
        "MET2.eff",
        "MET3.eff"
      ]
    },
    {
      "page": "expand.diallel",
      "title": "Create a Data Frame from All Combinations of Parentals",
      "topics": [
        "expand.diallel"
      ]
    },
    {
      "page": "GCA",
      "title": "General Combining Ability effect",
      "topics": [
        "GCA",
        "GCAmis"
      ]
    },
    {
      "page": "GCAC",
      "title": "General Combining Ability without considering the selfed parents",
      "topics": [
        "GCAC"
      ]
    },
    {
      "page": "griffing56",
      "title": "Griffing's dataset for diallel analysis",
      "topics": [
        "griffing56"
      ]
    },
    {
      "page": "H.BAR",
      "title": "Average heterosis effect",
      "topics": [
        "H.BAR"
      ]
    },
    {
      "page": "hayman54",
      "title": "Hayman dataset for diallel analysis",
      "topics": [
        "hayman54"
      ]
    },
    {
      "page": "Hi",
      "title": "Average heterosis effect",
      "topics": [
        "Hi"
      ]
    },
    {
      "page": "Utilities",
      "title": "Utilities for fitting diallel models.",
      "topics": [
        "checkScheme",
        "emm.diallel",
        "int.matrix"
      ]
    },
    {
      "page": "lm.diallel",
      "title": "Fitting diallel linear models",
      "topics": [
        "lm.diallel"
      ]
    },
    {
      "page": "methods",
      "title": "Methods for diallel model fitting",
      "topics": [
        "anova.diallel",
        "glht.diallel",
        "model.matrix.diallel",
        "predict.diallel",
        "summary.diallel",
        "vcov.diallel"
      ]
    },
    {
      "page": "lonnquist61",
      "title": "Half diallel of maize dataset",
      "topics": [
        "lonnquist61"
      ]
    },
    {
      "page": "MatBlock",
      "title": "Design matrix for blocks",
      "topics": [
        "matBlock"
      ]
    },
    {
      "page": "MDD",
      "title": "Mean Dominance Deviation effect",
      "topics": [
        "MDD"
      ]
    },
    {
      "page": "mmer.diallel",
      "title": "Fitting random diallel linear models",
      "topics": [
        "mmer.diallel"
      ]
    },
    {
      "page": "model.matrixDiallel",
      "title": "Incidence matrices for Diallel model parametrisation",
      "topics": [
        "model.matrixDiallel",
        "model.matrixDiallel.MET"
      ]
    },
    {
      "page": "REC",
      "title": "Reciprocal Effect not parted into RGCA and RSCA",
      "topics": [
        "REC",
        "REC.G3"
      ]
    },
    {
      "page": "RGCA",
      "title": "Reciprocal General Combining Ability",
      "topics": [
        "RGCA"
      ]
    },
    {
      "page": "RSCA",
      "title": "Reciprocal Specific Combining Ability",
      "topics": [
        "RSCA"
      ]
    },
    {
      "page": "SCA",
      "title": "Specific Combining Ability",
      "topics": [
        "SCA",
        "SCA.G3",
        "SCA.GE",
        "SCAmis"
      ]
    },
    {
      "page": "SP",
      "title": "Selfed Parents effect",
      "topics": [
        "SP"
      ]
    },
    {
      "page": "tSCA",
      "title": "Total Specific Combining Ability",
      "topics": [
        "tSCA"
      ]
    },
    {
      "page": "Vei",
      "title": "Variety Effect",
      "topics": [
        "VEi"
      ]
    },
    {
      "page": "zhang05",
      "title": "Data for diallel analysis from Zhang (2005)",
      "topics": [
        "zhang05"
      ]
    }
  ],
  "_readme": "https://github.com/onofriandreapg/lmdiallel/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "dplyr",
    "enhancer",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "multcomp",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "plyr",
    "purrr",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "rlang",
    "sandwich",
    "sommer",
    "stringi",
    "stringr",
    "survival",
    "TH.data",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "zoo"
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "lmdiallel",
  "_universes": [
    "onofriandreapg"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-23T08:52:11.000Z",
      "distro": "noble",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "ddd9ab71128c4530914207c89911745c5d7504e7eb92e2636df6899eecaafccf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-23T08:52:26.000Z",
      "distro": "noble",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "78e36b9af89a5e36663dbb71669a7495f189d19ce908fb439ced4c2c76848c93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-23T08:52:02.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "3ca9c5f3c7b8aec3876644447fafb18220344fd5c203897a53a9a0ee6a81b882",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-23T08:52:48.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "83d9bc6d40b2e274fa065d4cb8a20b92c93fe32a28fc8210c7e1f5929dcdb1da",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-06-23T08:52:18.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "fbe6fc52f708a88c2769ff18ca369d5fd50c90b7ce370a10bf801e84ab60ddbd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-23T08:51:28.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "6b1097f163ecbc9271e151c0e86b09457a9513fc3b6dd701b6748c03e2fa487f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-23T08:51:48.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "d2fe4eb2226998e990b4ef65aeb1f4cb39297c3b493eef5e2c091d9e6d3726f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-23T08:51:22.000Z",
      "commit": "f0d1272bea0878d3ebe604943dc71693e664d004",
      "fileid": "f687e7d2ee885c4ff1151161f40254e71f4850691a4cabc77d5f7bf94f2c2af7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/onofriandreapg/actions/runs/28013993971"
    }
  ]
}