{
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  "Package": "statforbiology",
  "Version": "1.0.2",
  "Date": "2025-09-07",
  "Type": "Package",
  "Title": "Data Analyses in Agriculture and Biology",
  "Authors@R": "c(person(\"Andrea\", \"Onofri\", role = c(\"aut\", \"cre\"), \nemail = \"andrea.onofri@unipg.it\"))",
  "Description": "Contains several tools for nonlinear regression analyses\nand general data analysis in biology and agriculture. Contains\nalso datasets for practicing and teaching purposes. Supports\nthe blog: Onofri (2024) \"Fixing the bridge between biologists\nand statisticians\" <https://www.statforbiology.com> and the\nbook: Onofri (2024) \"Experimental Methods in Agriculture\"\n<https://www.statforbiology.com/_statbookeng/>. The blog is a\ncollection of short articles aimed at improving the efficiency\nof communication between biologists and statisticians, as\npointed out in Kozak (2016) <doi:10.1590/0103-9016-2015-0399>,\nspreading a better awareness of the potential usefulness,\nbeauty and limitations of biostatistic.",
  "License": "GPL-3",
  "URL": "https://github.com/OnofriAndreaPG/statforbiology",
  "BugReports": "https://github.com/OnofriAndreaPG/statforbiology/issues",
  "Encoding": "UTF-8",
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  "Repository": "https://onofriandreapg.r-universe.dev",
  "Date/Publication": "2025-12-05 13:10:46 UTC",
  "RemoteUrl": "https://github.com/onofriandreapg/statforbiology",
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  "NeedsCompilation": "no",
  "Packaged": {
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  "Author": "Andrea Onofri [aut, cre]",
  "Maintainer": "Andrea Onofri <andrea.onofri@unipg.it>",
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  "_published": "2026-06-03T09:11:45.395Z",
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    "committer": "Andrea <onofriandreapg@gmail.com>",
    "message": "Update plotRes.R\n",
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      "package": "multcomp",
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      "date": "2024-10-21"
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    "angularTransform",
    "asymReg.fun",
    "beta.fun",
    "bragg.3.fun",
    "bragg.4.fun",
    "check.hom",
    "compCoefs",
    "compCurves",
    "contr.Tukey",
    "cousens85.fun",
    "CVA",
    "DRC.asymReg",
    "DRC.beta",
    "DRC.bragg.3",
    "DRC.bragg.4",
    "DRC.cousens85",
    "DRC.E2",
    "DRC.E3",
    "DRC.E4",
    "DRC.expoDecay",
    "DRC.expoGrowth",
    "DRC.L2",
    "DRC.linear",
    "DRC.logCurve",
    "DRC.lorentz.3",
    "DRC.lorentz.4",
    "DRC.negExp",
    "DRC.poly2",
    "DRC.powerCurve",
    "DRC.SSasymp",
    "DRC.YL",
    "E2.fun",
    "E3.fun",
    "E4.fun",
    "expoDecay.fun",
    "expoGrowth.fun",
    "G2.fun",
    "G3.fun",
    "G4.fun",
    "getAgroData",
    "getPlotData",
    "GGE",
    "gnlht",
    "L2.fun",
    "L3.fun",
    "L4.fun",
    "linear.fun",
    "LL2.fun",
    "LL3.fun",
    "LL4.fun",
    "logCurve.fun",
    "lorentz.3.fun",
    "lorentz.4.fun",
    "ma",
    "negExp.fun",
    "NLS.asymReg",
    "NLS.beta",
    "NLS.bragg.3",
    "NLS.bragg.4",
    "NLS.cousens85",
    "NLS.E2",
    "NLS.E3",
    "NLS.E4",
    "NLS.expoDecay",
    "NLS.expoGrowth",
    "NLS.G2",
    "NLS.G3",
    "NLS.G4",
    "NLS.L2",
    "NLS.L3",
    "NLS.L4",
    "NLS.linear",
    "NLS.linearOrigin",
    "NLS.LL2",
    "NLS.LL3",
    "NLS.LL4",
    "NLS.logCurve",
    "NLS.lorentz.3",
    "NLS.lorentz.4",
    "NLS.negExp",
    "NLS.poly2",
    "NLS.powerCurve",
    "NLS.W1.2",
    "NLS.W1.3",
    "NLS.W1.4",
    "NLS.W2.2",
    "NLS.W2.3",
    "NLS.W2.4",
    "NLS.YL",
    "pairComp",
    "plotnls",
    "plotRes",
    "poly2.fun",
    "powerCurve.fun",
    "R2nls",
    "W1.2.fun",
    "W1.3.fun",
    "W1.4.fun",
    "W2.2.fun",
    "W2.3.fun",
    "W2.4.fun",
    "YL.fun"
  ],
  "_datasets": [
    {
      "name": "beetGrowth",
      "title": "Growth of sugarbeet in weed-infested and weed-free conditions",
      "object": "beetGrowth",
      "file": "beetGrowth.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "DAE",
        "weightInf",
        "weightFree"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "degradation",
      "title": "Soil degradation kinetic for a herbicide",
      "object": "degradation",
      "file": "degradation.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Time",
        "Conc"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "metamitron",
      "title": "Degradation of metamitron in soil with co-applied herbicides",
      "object": "metamitron",
      "file": "metamitron.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Time",
        "Herbicide",
        "Conc"
      ],
      "rows": 96,
      "table": true,
      "tojson": true
    },
    {
      "name": "mixture",
      "title": "Efficacy of the mixture of two herbicides",
      "object": "mixture",
      "file": "mixture.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Treat",
        "Weight"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AMMI",
      "title": "AMMI analysis for multienvironment genotype experiments",
      "topics": [
        "AMMI"
      ]
    },
    {
      "page": "angularTransform",
      "title": "Angular transformation for percentages",
      "topics": [
        "angularTransform"
      ]
    },
    {
      "page": "anova.aovList",
      "title": "Prints an ANOVA table for an 'aovList' object",
      "topics": [
        "anova.aovlist"
      ]
    },
    {
      "page": "SSasymReg",
      "title": "Asymptotic functions",
      "topics": [
        "asymReg.fun",
        "DRC.asymReg",
        "DRC.SSasymp",
        "NLS.asymReg"
      ]
    },
    {
      "page": "beetGrowth",
      "title": "Growth of sugarbeet in weed-infested and weed-free conditions",
      "topics": [
        "beetGrowth"
      ]
    },
    {
      "page": "biplot.AMMI",
      "title": "Biplots for AMMI and GGE analyses of multi-environment genotype experiments",
      "topics": [
        "biplot.AMMIobject",
        "biplot.GGEobject"
      ]
    },
    {
      "page": "boxcox.nls",
      "title": "Transform-both-sides (TBS) method for nonlinear regression",
      "concept": [
        "Box-Cox transform-both-sides transformation"
      ],
      "topics": [
        "boxcox.nls",
        "summary.nlsbc"
      ]
    },
    {
      "page": "check.hom",
      "title": "Check linear models for homoscedasticity",
      "topics": [
        "check.hom"
      ]
    },
    {
      "page": "compCoefs",
      "title": "Pairwise comparisons of model parameters for nls objects",
      "topics": [
        "compCoefs"
      ]
    },
    {
      "page": "compCurves",
      "title": "Compare regression curves in a pairwise fashion",
      "topics": [
        "compCurves"
      ]
    },
    {
      "page": "contr.Tukey",
      "title": "Pairwise contrast matrix",
      "topics": [
        "contr.Tukey"
      ]
    },
    {
      "page": "CVA",
      "title": "Canonical variate analysis for multienvironment and multitrait genotype experiments",
      "topics": [
        "CVA"
      ]
    },
    {
      "page": "degradation",
      "title": "Soil degradation kinetic for a herbicide",
      "topics": [
        "degradation"
      ]
    },
    {
      "page": "deviance.drc",
      "title": "Residual deviance for a non-linear regression fit.",
      "topics": [
        "deviance.drc"
      ]
    },
    {
      "page": "SSexpoDecay",
      "title": "Exponential decay function",
      "topics": [
        "DRC.expoDecay",
        "expoDecay.fun",
        "NLS.expoDecay"
      ]
    },
    {
      "page": "SSexpoGrowth",
      "title": "Exponential growth function",
      "topics": [
        "DRC.expoGrowth",
        "expoGrowth.fun",
        "NLS.expoGrowth"
      ]
    },
    {
      "page": "getAgroData",
      "title": "Get one of the available datasets",
      "topics": [
        "getAgroData"
      ]
    },
    {
      "page": "getPlotData",
      "title": "Get the data for plotting with ggplot()",
      "topics": [
        "getPlotData",
        "getPlotData.drc",
        "getPlotData.drcte",
        "getPlotData.nls"
      ]
    },
    {
      "page": "GGE",
      "title": "GGE analysis for multienvironment genotype experiments",
      "topics": [
        "GGE"
      ]
    },
    {
      "page": "gnlht",
      "title": "Linear/nonlinear contrasts of model parameters",
      "topics": [
        "gnlht"
      ]
    },
    {
      "page": "SSlinear",
      "title": "Simple linear regression functions",
      "topics": [
        "DRC.linear",
        "linear.fun",
        "NLS.linear",
        "NLS.linearOrigin"
      ]
    },
    {
      "page": "SSlogCurve",
      "title": "Logarithmic curve",
      "topics": [
        "DRC.logCurve",
        "logCurve.fun",
        "logCurveNI.fun",
        "NLS.logCurve",
        "NLS.logCurveNI"
      ]
    },
    {
      "page": "ma",
      "title": "Moving average for a vector",
      "topics": [
        "ma"
      ]
    },
    {
      "page": "metamitron",
      "title": "Degradation of metamitron in soil with co-applied herbicides",
      "topics": [
        "metamitron"
      ]
    },
    {
      "page": "mixture",
      "title": "Efficacy of the mixture of two herbicides",
      "topics": [
        "mixture"
      ]
    },
    {
      "page": "SSnegExp",
      "title": "Negative exponential functions",
      "topics": [
        "DRC.negExp",
        "DRC.negExpDist",
        "negExp.fun",
        "negExpDist.fun",
        "NLS.negExp",
        "NLS.negExpDist"
      ]
    },
    {
      "page": "pairComp",
      "title": "Pairwise comparisons between the numeric elements of a vector",
      "topics": [
        "pairComp"
      ]
    },
    {
      "page": "plotnls",
      "title": "Plotting diagnostics for an 'nls' object",
      "topics": [
        "plotnls"
      ]
    },
    {
      "page": "plotRes",
      "title": "Graphical analyses of residuals for 'drc' objects",
      "topics": [
        "plotRes"
      ]
    },
    {
      "page": "SSpoly2",
      "title": "Simple polynomial regression functions",
      "topics": [
        "DRC.poly2",
        "NLS.poly2",
        "poly2.fun"
      ]
    },
    {
      "page": "R2nls",
      "title": "Goodness of fit for nonlinear regression",
      "topics": [
        "R2nls"
      ]
    },
    {
      "page": "SSbeta",
      "title": "Beta equation",
      "topics": [
        "beta.fun",
        "DRC.beta",
        "NLS.beta",
        "SSbeta"
      ]
    },
    {
      "page": "SSbragg",
      "title": "Bragg's Equation",
      "topics": [
        "bragg.3.fun",
        "bragg.4.fun",
        "DRC.bragg.3",
        "DRC.bragg.4",
        "NLS.bragg.3",
        "NLS.bragg.4",
        "SSbragg"
      ]
    },
    {
      "page": "SScousens85",
      "title": "Rectangular hyperbola for yield/weed density relationship",
      "topics": [
        "cousens85.fun",
        "DRC.cousens85",
        "NLS.cousens85",
        "SScousens85"
      ]
    },
    {
      "page": "SSE",
      "title": "Modified Gompertz equations",
      "topics": [
        "DRC.E2",
        "DRC.E3",
        "DRC.E4",
        "E2.fun",
        "E3.fun",
        "E4.fun",
        "NLS.E2",
        "NLS.E3",
        "NLS.E4",
        "SSE"
      ]
    },
    {
      "page": "SSGompertz",
      "title": "Gompertz equations",
      "topics": [
        "G2.fun",
        "G3.fun",
        "G4.fun",
        "NLS.G2",
        "NLS.G3",
        "NLS.G4",
        "SSGompertz"
      ]
    },
    {
      "page": "SSL",
      "title": "Logistic equations",
      "topics": [
        "DRC.L2",
        "L2.fun",
        "L3.fun",
        "L4.fun",
        "NLS.L2",
        "NLS.L3",
        "NLS.L4",
        "SSL"
      ]
    },
    {
      "page": "SSLL",
      "title": "Log-logistic equation",
      "topics": [
        "LL2.fun",
        "LL3.fun",
        "LL4.fun",
        "NLS.LL2",
        "NLS.LL3",
        "NLS.LL4",
        "SSLL"
      ]
    },
    {
      "page": "SSlorentz",
      "title": "Lorentz equation",
      "topics": [
        "DRC.lorentz.3",
        "DRC.lorentz.4",
        "lorentz.3.fun",
        "lorentz.4.fun",
        "NLS.lorentz.3",
        "NLS.lorentz.4",
        "SSlorentz"
      ]
    },
    {
      "page": "SSpowerCurve",
      "title": "Power curve equation",
      "topics": [
        "DRC.powerCurve",
        "NLS.powerCurve",
        "powerCurve.fun",
        "SSpowerCurve"
      ]
    },
    {
      "page": "SSW1",
      "title": "Weibull equation (Type I)",
      "topics": [
        "NLS.W1.2",
        "NLS.W1.3",
        "NLS.W1.4",
        "SSW1",
        "W1.2.fun",
        "W1.3.fun",
        "W1.4.fun"
      ]
    },
    {
      "page": "SSW2",
      "title": "Weibull equation (Type II)",
      "topics": [
        "NLS.W2.2",
        "NLS.W2.3",
        "NLS.W2.4",
        "SSW2",
        "W2.2.fun",
        "W2.3.fun",
        "W2.4.fun"
      ]
    },
    {
      "page": "SSYL",
      "title": "Yield loss equation (Rectangular hyperbola)",
      "topics": [
        "DRC.YL",
        "NLS.YL",
        "SSYL",
        "YL.fun"
      ]
    }
  ],
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